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HCPCS Q2039 · Level II · Q code

Q2039: Influenza virus vaccine, not otherwise specified, HCPCS Level II Q code

Compiled from CMS files by the QuickIntell RCM Editorial Team · Data effective · Method: reference methodology · Report a data correction

Data currency: HCPCS Level II file: October 2026 (effective October 1, 2026); PFS relative value file: RVU26D, released August 26, 2026 (effective October 1, 2026); NCCI MUE tables: 2026 Q4 (effective October 1, 2026); NCCI PTP edits: v323r0 (2026 Q4) (effective October 1, 2026); OPPS Addendum B: October 2026 (effective October 1, 2026); Medicare Coverage Database LCD export: MCD release October 8, 2026 (effective October 4, 2026). Next CMS release: January 1, 2027 (quarterly update) for the HCPCS Level II file and NCCI MUE tables and NCCI PTP edits and OPPS Addendum B; RVU27A with the CY2027 PFS final rule, effective January 1, 2027 for the PFS relative value file; weekly, every Thursday for the Medicare Coverage Database LCD export.

Key facts for Q2039

Medicare payment
no PFS amount
PFS status X
Coverage code
D
special coverage instructions apply
Practitioner MUE
1
MAI 2
OPPS status
SI L
Influenza Vaccine; Pneumococcal Pneumonia Vaccine; Hepatitis B Vaccines; Covid-19 Vaccine; Monoclonal Antibody Therapy Product
NCCI PTP pairs
28
28 hospital outpatient
LCDs and articles
0 / 1

TL;DR

CMS describes HCPCS Q2039, added in 2011, as "Influenza virus vaccine, not otherwise specified". The physician fee schedule lists Q2039 with status X (statutory exclusion: not a physician service under the fee schedule), so the PFS carries no national amount for it. MUE limits for Q2039: practitioner 1 (MAI 2, Code Descriptor / CPT Instruction); hospital outpatient 1 (MAI 2, Code Descriptor / CPT Instruction). In the NCCI PTP files v323r0 Q2039 appears in 9 practitioner pairs as column 2 and 19 as column 1 (most often with 90653, 90672, 90674), and in 9 hospital outpatient pairs as column 2 and 19 as column 1. 1 billing and coding article lists Q2039 across 4 states: A54767. OPPS status indicator L: Influenza Vaccine; Pneumococcal Pneumonia Vaccine; Hepatitis B Vaccines; Covid-19 Vaccine; Monoclonal Antibody Therapy Product. HCPCS record: BETOS O1G (immunizations/vaccinations); pricing indicator 54; type of service V (pneumococcal/flu vaccine). 5 other active codes open with "Influenza virus vaccine"; related codes: Q2035, Q2038, Q2037, Q2036.

Q2039 descriptor and code status

The October 2026 HCPCS Level II file describes Q2039 as “Influenza virus vaccine, not otherwise specified”. It sits in the Q section (temporary codes), listed with the other Q codes for services and supplies (non-drug). Although searches often call it the "Q2039 CPT code", Q2039 is a HCPCS Level II code maintained by CMS, not an AMA CPT code; both go in the same procedure-code field on the claim.

HCPCS file attributes of Q2039
FieldValue
Short descriptorInfluenza virus vaccine, nos
Added to HCPCS2011-01-01
Last actionN (no maintenance), effective 2017-01-01
Coverage codeD: special coverage instructions apply
Pricing indicator54: vaccinations
BETOS categoryO1G: immunizations/vaccinations
Type of serviceV: pneumococcal/flu vaccine

Medicare payment for Q2039

The physician fee schedule lists Q2039 with status X (statutory exclusion: not a physician service under the fee schedule), so the PFS carries no national amount for it. The amounts below are national figures from the October 2026 CMS files; the contractor applies the locality, rural or state adjustment and the beneficiary's cost sharing.

Physician fee schedule (RVU26D)

Status X: statutory exclusion: not a physician service under the fee schedule. Global period XXX (global surgery concept does not apply); PC/TC indicator 9 (professional/technical concept does not apply).

Hospital outpatient (OPPS Addendum B)

Status indicator L (Influenza Vaccine; Pneumococcal Pneumonia Vaccine; Hepatitis B Vaccines; Covid-19 Vaccine; Monoclonal Antibody Therapy Product), with no separate OPPS payment rate.

Ambulatory surgical center (Addendum BB)

Payment indicator L1 (Influenza vaccine; pneumococcal vaccine. Packaged item/service; no separate payment made).

Medically Unlikely Edits for Q2039

MUE limits for Q2039: practitioner 1 (MAI 2, Code Descriptor / CPT Instruction); hospital outpatient 1 (MAI 2, Code Descriptor / CPT Instruction). The practitioner MUE is a date-of-service policy edit: units above the limit deny even when split across lines, and appeals rarely succeed.

MUE values for Q2039 by setting
SettingMUE (units/DOS)MAICMS rationale
Practitioner services12 Date of Service Edit: PolicyCode Descriptor / CPT Instruction
Facility outpatient hospital12 Date of Service Edit: PolicyCode Descriptor / CPT Instruction

The MUE lookup for Q2039 shows every setting next to any other code on the same claim.

NCCI edits and add-on rules

In the practitioner PTP file v323r0, Q2039 is the column-2 (bundled) code in 9 active pairs, 0% of which allow a modifier and the column-1 code in 19 (21% modifier-allowed); 2 earlier pairs have been deleted. CMS's most frequent rationale for the bundled pairs: Mutually exclusive procedures.

Column-1 codes most often paired with Q2039 (practitioner)
Column-1 codePairs
90653 (CPT; descriptor licensed by AMA)1
90672 (CPT; descriptor licensed by AMA)1
90674 (CPT; descriptor licensed by AMA)1
90682 (CPT; descriptor licensed by AMA)1
90756 (CPT; descriptor licensed by AMA)1
Q2035 Afluria vacc, 3 yrs & >, im1
Q2036 Flulaval vacc, 3 yrs & >, im1
Q2037 Fluvirin vacc, 3 yrs & >, im1
Column-2 codes bundled into Q2039 (practitioner)
Column-2 codePairs
90655 (CPT; descriptor licensed by AMA)1
90656 (CPT; descriptor licensed by AMA)1
90657 (CPT; descriptor licensed by AMA)1
90658 (CPT; descriptor licensed by AMA)1
90660 (CPT; descriptor licensed by AMA)1
90661 (CPT; descriptor licensed by AMA)1
90662 (CPT; descriptor licensed by AMA)1
90664 (CPT; descriptor licensed by AMA)1

In the hospital outpatient PTP file v323r0, Q2039 is the column-2 (bundled) code in 9 active pairs, 0% of which allow a modifier and the column-1 code in 19 (21% modifier-allowed); 2 earlier pairs have been deleted. CMS's most frequent rationale for the bundled pairs: Mutually exclusive procedures.

Column-1 codes most often paired with Q2039 (hospital outpatient)
Column-1 codePairs
90653 (CPT; descriptor licensed by AMA)1
90672 (CPT; descriptor licensed by AMA)1
90674 (CPT; descriptor licensed by AMA)1
90682 (CPT; descriptor licensed by AMA)1
90756 (CPT; descriptor licensed by AMA)1
Q2035 Afluria vacc, 3 yrs & >, im1
Q2036 Flulaval vacc, 3 yrs & >, im1
Q2037 Fluvirin vacc, 3 yrs & >, im1
Column-2 codes bundled into Q2039 (hospital outpatient)
Column-2 codePairs
90655 (CPT; descriptor licensed by AMA)1
90656 (CPT; descriptor licensed by AMA)1
90657 (CPT; descriptor licensed by AMA)1
90658 (CPT; descriptor licensed by AMA)1
90660 (CPT; descriptor licensed by AMA)1
90661 (CPT; descriptor licensed by AMA)1
90662 (CPT; descriptor licensed by AMA)1
90664 (CPT; descriptor licensed by AMA)1

Q2039 is neither an add-on code nor a designated primary code in the 2026 Q4 NCCI add-on edit file.

Pair counts show exposure, not the answer for one claim. Check Q2039 against a second code to see whether the pair bundles and whether a modifier can separate the services.

Medicare coverage policies for Q2039

0 active Local Coverage Determinations and 1 billing and coding article list Q2039. Each applies only in its contractor's jurisdiction, and the article carries the diagnosis codes that support the item or service.

Billing and Coding Articles listing Q2039
ArticleTitleContractor(s)Related LCD
A54767Billing and Coding: Medicare Preventive Coverage for Certain VaccinesPalmetto GBA—

Denials to expect on Q2039

the diagnosis or documentation does not meet the LCD or billing article that lists Q2039

units of Q2039 exceed the practitioner MUE of 1 per date of service

the modifier reported is inconsistent with the code

the claim lacks the description, invoice or pricing detail a contractor-priced code needs

Where QuickIntell fits for Q2039 claims

QuickCode supports qualified coder review of units, modifiers and NCCI pairs for Q2039 before the claim leaves, and QuickRCM carries claim readiness and the denial follow-up when an edit or coverage policy is missed.

Frequently asked questions: HCPCS Q2039

What does HCPCS code Q2039 describe?

"Influenza virus vaccine, not otherwise specified" (short descriptor "Influenza virus vaccine, nos"), in the Q section (temporary codes). Added 2011-01-01; last action N (no maintenance) effective 2017-01-01.

Is Q2039 a CPT code?

No: CMS maintains Q2039 in HCPCS Level II, while the AMA maintains CPT. People do search "Q2039 CPT code", and it goes in the same procedure-code field.

What does Medicare pay for Q2039?

The physician fee schedule lists Q2039 with status X (statutory exclusion: not a physician service under the fee schedule), so the PFS carries no national amount for it.

How many units of Q2039 can be billed per day?

MUE limits for Q2039: practitioner 1 (MAI 2, Code Descriptor / CPT Instruction); hospital outpatient 1 (MAI 2, Code Descriptor / CPT Instruction). For the practitioner MUE (MAI 2), units above 1 deny for the whole day as a policy limit; denials arrive as CARC 151.

Does Medicare cover Q2039?

Coverage code D (special coverage instructions apply). 1 billing and coding article lists Q2039 across 4 states: A54767.

Sources

Every figure on this page is taken from the CMS publications below, as released by the Centers for Medicare & Medicaid Services. Projection built 2026-10-10. Verify against the primary file before billing or contracting decisions. The reference methodology explains how each figure is computed from these files.

Disclaimer

This page is an operational reference compiled from CMS publications: the HCPCS Level II file, the physician, DMEPOS and clinical laboratory fee schedules, OPPS and ASC addenda, NCCI MUE, PTP and add-on edit tables and the Medicare Coverage Database. Amounts are Medicare national figures before locality and state adjustment; Medicaid and commercial payers set their own. CPT codes are shown as numbers only; CPT descriptors are copyright AMA. Nothing here is legal, clinical or billing advice.

Found a figure that does not match the CMS file? Report a data correction with the CMS file and the value you expected; the request reaches the editorial team through the contact form.