Skip to main content

LCD L35922: Lab: Special Histochemical Stains and Immunohistochemical Stains

LCD L35922, Lab: Special Histochemical Stains and Immunohistochemical Stains, is the Local Coverage Determination that Palmetto GBA applies to claims from 7 states (AL, GA, NC, SC, TN, VA, WV), effective 2025-03-13 and first in force 2015-10-01. The policy text runs 1,785 words. 3 other contractors publish a policy with the same title, so the criteria that apply depend on where the service is furnished.

QuickIntell editorial content · Legacy registry date · Review not verified

Data effective
Data currency: Medicare Coverage Database LCD export release of September 24, 2026 (effective September 20, 2026). Next CMS release: weekly (Thursdays) for the MCD.
Contractor
Palmetto GBA
States and territories
7
AL GA NC SC TN VA WV
Revision effective
2025-03-13
Original effective
2015-10-01
Policy text
1,785 words
Covered ICD-10 codes (articles)
0

Where this LCD applies

Each contract number is a jurisdiction on the remittance; the policy binds claims processed under these contracts and no others.

Contracts that apply LCD L35922
ContractContractorTypeStates
11201Palmetto GBAA and B and HHH MACSC
11301Palmetto GBAA and B and HHH MACVA
11401Palmetto GBAA and B and HHH MACWV
11501Palmetto GBAA and B and HHH MACNC
11202Palmetto GBAA and B and HHH MACSC
11302Palmetto GBAA and B and HHH MACVA
11402Palmetto GBAA and B and HHH MACWV
11502Palmetto GBAA and B and HHH MACNC
10111Palmetto GBAA and B MACAL
10211Palmetto GBAA and B MACGA
10311Palmetto GBAA and B MACTN
10112Palmetto GBAA and B MACAL
10212Palmetto GBAA and B MACGA
10312Palmetto GBAA and B MACTN

Billing and coding: diagnoses and procedure codes

Since 2019 the codes live in the companion article rather than the LCD. Billing and Coding A56838 (Billing and Coding: Lab: Special Histochemical Stains and Immunohistochemical Stains) carries the diagnosis and procedure lists the contractor loads as the claims edit. CPT codes are shown as bare numbers because the descriptors are licensed by the AMA; HCPCS Level II descriptors are public and shown.

A56838: Billing and Coding: Lab: Special Histochemical Stains and Immunohistochemical Stains (Billing and Coding, effective 2024-07-14)

Covered ICD-10-CM codes
0
0 groups
Non-covered ICD-10-CM codes
0
Procedure codes listed
7
Full article
cms.gov record

Procedure codes: 88312, 88313, 88341, 88342, 88344, 88360, 88361.

Coverage indications, limitations and medical necessity

This policy does not designate specific special histochemical stains (aka special stains) and/or immunohistochemical (IHC) stains that should be used in the differential diagnosis of tissues or neoplasms because this information is readily available in textbooks and various scientific publications. There is no attempt in this policy to be an all-inclusive catalog for special and immunohistochemical stains. This policy identifies the medically necessary criteria for the use of special stains and/or IHC stains. Additionally, this policy addresses, based on claims review, the scenarios that may be driving medically unnecessary over-utilization or incorrect billing of these services including:

• Reflex templates or pre-orders for special stains and/or IHC stains prior to review of the routine hematoxylin and eosin (H&E) stain by the pathologist; or

• Use of special stains and/or IHC stains without clinical evidence that the stain is actionable or provides the treating physician with information that changes patient management; or

• Use of added stains when the diagnosis is already known based on morphologic evaluation of the primary stain.

The surgical pathology report is expected to designate the specific block(s) upon which IHC testing is performed, the reason and results for IHC testing, the specific markers, and whether single antibody(s) or a cocktail of antibodies is utilized. A statement alone in the pathology report that states, “IHC confirms the diagnosis” will not be covered as reasonable and necessary.

Medical Necessity of Services Performed

There are many different relationships that exist in the provision of pathology services in the United States. It is the obligation of each party to recognize that they are responsible for the medical necessity of the services submitted. For example, when a physician or physician group performs the professional component of services described in this policy and another entity performs the technical services, it is the obligation of each entity to independently assure the medical necessity of the services rendered by each entity.

Special Stains/IHC Medical Necessity

The pathologist may perform such additional tests under the following circumstances:

• Services are medically necessary so that a complete and accurate diagnosis can be reported to the treating physician/practitioner.

• Results of the tests are communicated to and are used by the treating physician/practitioner in the treatment of the beneficiary.

• Pathologist documents in their report why additional testing was done.

The above citation means that reflex templates or pre-orders for special stains and/or IHC stains prior to review of the routine H&E stain by the pathologist are not reasonable and necessary. A pathologist must first review the H&E stain prior to ordering special stains or IHC.

Exceptions do exist and are recognized standards of care in the practice of pathology. These exceptions include but are not limited to renal, liver, and neuromuscular biopsies, and for the suspicion of an infectious disease, particularly in an immune compromised patient. In certain clearly defined circumstances, it may be reasonable to perform some IHC on sentinel lymph nodes when the frozen sections show they are free of tumor.

The medical necessity for the special stain or IHC studies, and the results of the stain or IHC, must be documented in the surgical pathology report.

IHC for Breast Pathology

Ki-67 (MIB-1) has prognostic value in the population of patients with ER+, HER2- lymph node positive high risk breast cancer for use of the Cyclin-dependent 4 and 6 (CDK 4/6) inhibitor abermaciclib (Eli Lilly and Company) as adjuvant therapy in addition to endocrine therapy. Outside of this exception, Ki-67 is not considered reasonable and necessary for breast cancer and consequently will not be covered by Medicare.

In the absence of professional guidelines based on proven scientific literature, standing orders from clinicians for such tests as Ki-67 and epidermal growth factor receptor (EGFR) on every breast cancer are not reasonable and necessary, and are not a covered Medicare service.

Special Stains and/or IHC for Gastrointestinal (GI) Pathology

Only the pathologist determines the necessity for a special stain. Ordering special stains or IHC stains on every specimen prior to review of the routine H&E stain is not reasonable and necessary.

Other examples of special stains or IHC that are not reasonable and necessary on every specimen include:

• Esophagus – fungal stains, trichrome, diastase-PAS (D-PAS), CDX-2 or other mucin stains;

• Gastric – alcian blue/periodic acid-Schiff (AB-PAS), D-PAS, CDX-2 or other mucin stains, or special stains or IHC for Helicobacter pylori (H. pylori), or neuroendocrine markers such as synaptophysin or chromogranin;

• Duodenum – AB-PAS, D-PAS, CD3, and trichrome, or other mucin stains;

• Colon – CD3, p53 trichrome;

• Hyperplastic polyps – Ki-67, CK20, p53, CEA, BRAF; and

• Tubular or tubulovillous adenoma – Ki-67, CK20, CEA, p53, mismatch repair (MMR).

If special stains or IHC are needed in addition to the routine H&E for gastric specimens, specific documentation to justify the medical necessity for the stain is required in the pathology report. Cases that may require special stains or IHC include but are not limited to the following:

• Detection of H. pylori in an appropriate milieu when organisms are not seen on H&E stained slides;

• Evaluating atrophic gastritis for evidence of autoimmune etiology and for enterochromaffin-like (ECL) cell hyperplasia/carcinoid tumor;

• Characterizing a carcinoma, lymphoma, melanoma or sarcoma;

• Defining a gastrointestinal stromal tumor (GIST) and to distinguish it from mimics; and

• Ki-67 by IHC in the differential diagnosis of certain neuroendocrine tumors of the gut.

Special Stains and/or IHC for Prostate Pathology

It is not reasonable and necessary to routinely perform IHC testing (either single antibody or antibody cocktails) on cases with morphologically negative cores. The pathologist may choose to confirm a suspicious focus in 1 or more cores in a case irrespective of carcinoma in other cores. However, there must be reasonable and necessary documentation that the volume, multifocality or additional findings in lower-grade tumor positive biopsies will influence treatment decisions, prognosis or have other clinical implications per the NCCN Guidelines. 27 It is not a Medicare covered service if the results of immunohistochemical stains does not provide additional actionable information to the treating physician.

Prostate cases that may require reasonable and necessary IHC staining include but are not limited to the following:

• Indeterminate/suspicious focus and no other cores are positive for cancer;

• Single worrisome core with minimal % tumor (roughly

• In a multi-part biopsy with Gleason 3+3=6 cancer in 1 part, and atypical small acinar proliferation (ASAP) suspicious for Gleason 3+3=6 cancer in other part(s); the number of positive biopsy sites and % core involvement of these sites can affect therapeutic choices for active surveillance (AS), focal therapy or surgery

• In a multi-part biopsy with 4+3=7 or 4+4=8 cancer in 1 part, and ASAP suspicious for the same grade cancer in other part(s); workup is justified since the extent of high-grade cancer affects treatments;

• Identify tumor invasion of adjacent structures;

• Determine origin of undifferentiated/poorly differentiated neoplasm, such as bladder vs. prostate; and

• Other unexpected results when specific cell stains would be necessary.

Special Stains and/or IHC for Lung Cancer

The diagnostic challenge of a lung biopsy can often prompt the need for additional stains to define the neoplasm. However, the use of an excessive number of stains where results do not document their significance to provide actionable information are not reasonable and necessary.

The diagnosis of small cell and non-small cell carcinoma often requires additional stains, but it is essential that tumor tissue be carefully triaged to allow the patient’s sample to be evaluated for molecular markers (i.e., EGFR, ALK, and others) when clinically indicated.

IHC for Predictive Marker Tumor Profiling

Estrogen receptor (ER), progesterone receptor (PR) and human epidermal growth factor receptor (Her2) testing for the purpose of identifying patients likely to respond to hormonal therapy, biologics or chemotherapy is a covered Medicare service when medically necessary for breast and gastric adenocarcinoma.

Chemosensitivity profile tumor panels, regardless of whether it is performed by IHC or chromogenic in-situ hybridization (CISH), is not reasonable and necessary and is not a Medicare covered service.

IHC for Cervical/Gyn/Bladder/Kidney Tumors

A variety of IHC stains have found limited use in cervical, gynecologic, and urologic tumor settings. In unusual cases of cervical dysplasia, markers or surrogate markers for HPV may be useful where the diagnosis on conventional H&E stain cannot be made with certainty. These markers are clearly not reasonable and necessary on all biopsies.

In renal neoplasms IHC stains such as CK7, CK20, CAIX, CD10, CD117, PAX2, PAX8 among many can be used for accurate classification of renal neoplasms, both on core biopsy and on resection. 33 Core biopsies are often performed in patients for whom surgery is not an acceptable option due to known comorbidities and other potential risks/complications, or for tumors that may need treatment prior to surgery; therefore, accurate diagnosis on biopsy is crucial. Renal neoplasia entities or groups of entities are increasingly characterized by specific molecular features, often associated with either recognizable, specific morphologies or constellations of morphologies and corresponding immunohistochemical profiles. The correct diagnosis has clinical implications leading to more accurate prognosis, potential clinical management with targeted therapies and may identify hereditary or systemic associations. 28

There are morphologic features that are diagnostic of certain histologic types of tumors but similar growth patterns or cytologic features can be seen in a variety of tumor types. Thus, the rationale for IHC staining use should be properly documented as reasonable and necessary to resolve situations regarding the possible differential diagnoses. 29

IHC for Skin & Cutaneous/Central Nervous System (CNS) & Peripheral Nervous System (PNS) Lesions

Most skin lesions are diagnosed with routine H&E slides. A minority of skin lesions require immunostains (e.g., atypical fibroxanthomas, Merkel cell lesions, lymphomas). Most common skin lesions (e.g., seborrheic keratosis) do not require IHC stains. Use of IHC morphometric codes for skin lesions is not reasonable and necessary unless under rare instances.

Many CNS and PNS lesions are readily diagnosed with routine stains. However, recent classifications use defined molecular biomarkers as well as immunostains to identify and define specific lesions. 32

IHC for Bone Marrow Samples

Most bone marrow samples are diagnosed with the use of Wright’s-stained smears and the use of H&E stained slides with an iron stain supplementing the battery. The use of IHC stains may assist in the interpretation of cases where flow cytometry (FC) does not fit with the routine slide interpretation, when FC was not obtained or for the evaluation of cell types that are not detected or significantly underrepresented in FC studies, such as large lymphocytes, plasma cells and Reed-Sternberg cells. IHC stains are not needed to confirm the results of FC and cytogenetic studies. When medically indicated, justification for the use of both methods must be stated in the pathology report and billed accordingly.

Summary of evidence (opening)

Background

Routine H&E staining is the corner stone of tissue-based microscopic diagnosis. Thin sections of tissue are stained with H&E to visualize the tissue morphology. Hematoxylin dye stains the cell nuclei blue, and the eosin dye stains other structures pink/red. “Acid hematoxylin” is not a special stain given that all hematoxylin stains are acidic. This stain has never been recognized by the Biological Stain Commission. It is not reasonable and necessary to claim this stain as a special stain. H&E staining is included as part of pathology services.

Special stains are called “special” because they are dyes used to stain particular tissues, structures, or pathogens such as bacteria that may not be visible by routine H&E staining. Special stains can identify whether a substance is present or absent, where the substance is located in the tissue specimen, and frequently, how many or how much of a substance is present. There are special stains to identify bacteria, yeast, and fungi; for connective tissue, muscle, collagen, lipid and fibrin; for nuclei acids; and multi-purpose stains to identify basement membranes, mucins, and various other cellular constituents. Two major categories for special stains are recognized: One is specifically for microorganisms; the second is for all other purposes (not microorganisms) and specifically excludes detection of enzyme constituents.

IHC is a powerful tool for identifying substances and cells in tissue sections using the specificity of antigen-antibody reactions, where the antibody is linked to a colored indicator (stain) that can be seen with a microscope. More than 400 distinct antibody targets are currently available with varying sensitivity and specificity for a given target. A major use of IHC is to identify poorly differentiated malignant neoplasms (tumors) such as a carcinoma, lymphoma, melanoma, and sarcoma. Some IHC stains are useful in determining the primary site of a metastatic neoplasm. Others are used to guide specific therapies (e.g., human epidermal growth factor receptor 2 ( Her2) IHC to determine potential response to trastuzumab).

The contractor cites 36 sources in the bibliography; the full summary and analysis of evidence are in the CMS record.

Dates, lineage and related policies

Original determination effective
2015-10-01
Current revision effective
2025-03-13
Last reviewed by the contractor
2024-04-17
MCD version
44
Derived from
L35693

Other related documents: A59755 (Response to Comments).

Using this policy on a claim

Match the documented indication to the covered indications above before the service is scheduled, carry a diagnosis from the article's covered list on the claim line, and keep the elements the documentation section asks for in the record, because the contractor can request it later through medical review. A denial under this policy arrives as CARC 50 with remark N115; the LCD lookup guide walks through the appeal path and the Advance Beneficiary Notice rules, and the Palmetto GBA hub lists every other active policy from the same contractor.

The same policy title at other contractors

Contractors often adopt each other's policies and then revise them separately, so the criteria and the diagnosis lists drift apart. The topic comparison lines up every version.

Frequently asked questions

What does LCD L35922 cover?

• Results of the tests are communicated to and are used by the treating physician/practitioner in the treatment of the beneficiary. The full indications and limitations are reproduced on this page from the CMS Medicare Coverage Database export of September 24, 2026.

Which states does LCD L35922 apply to?

Palmetto GBA applies it to Medicare claims in AL, GA, NC, SC, TN, VA, WV. A Local Coverage Determination binds only the contractor that wrote it; the same service in another jurisdiction is judged under that contractor's own policy or, where none exists, claim by claim.

Which diagnosis codes support medical necessity under LCD L35922?

The current export links no billing and coding article with a diagnosis list to this LCD, so coverage is decided on the indications in the policy text and the documentation in the record rather than by an automated diagnosis edit.

How do I appeal a denial under LCD L35922?

The remittance carries claim adjustment reason code 50 with remark code N115, naming the LCD. Compare the documented indication with the policy's covered indications and the article's diagnosis list, then file a redetermination within 120 days with the record attached; if the service genuinely falls outside the policy, the patient can be billed only when a valid Advance Beneficiary Notice was obtained before the service.

Sources

Every figure on this page is taken from the CMS publications below, as released by the Centers for Medicare & Medicaid Services. Projection built 2026-10-02. Verify against the primary file before billing or contracting decisions.

Disclaimer

The policy text and code lists are reproduced from the CMS Medicare Coverage Database export as an operational reference. Verify against the current LCD and article on cms.gov before billing; coverage depends on the full record and the contractor. Not legal, clinical or billing advice.